PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11630.2
Common NameLR48_Vigan07g217000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 199aa    MW: 21486.7 Da    PI: 3.8888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11630.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.4e-142441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Vang01g11630.2  2 RSWGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 44
                    57**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.545152IPR001471AP2/ERF domain
SMARTSM003803.5E-26158IPR001471AP2/ERF domain
CDDcd000181.00E-13154No hitNo description
Gene3DG3DSA:3.30.730.101.9E-25154IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-16253IPR016177DNA-binding domain
PfamPF008474.5E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRSWGSWVSE IRAPNQKTRI WLGSYSTAEA AARAYDAALL CLKGSSANLN FPSSSSSHYI  60
PQDTVMSPKS IQRVAAAAAN NFLDTAIATT PSSPPLASTT SSSSLVSSPS ISSSPSDQID  120
DDVSLLSPFG AYTPPPPSVN CDQANESMAM MEYWYDLEEL QSPKYVEQML SGAFFDIDST  180
QLFDDLYEES DISLWSFC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504124.11e-106PREDICTED: ethylene-responsive transcription factor ERF014
TrEMBLA0A0L9V0K81e-143A0A0L9V0K8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RN931e-143A0A0S3RN93_PHAAN; Uncharacterized protein
STRINGGLYMA14G22970.23e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-28ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]